=== Starting job 2025-05-05T18:56:48.030Z ===
== starting git pull ==
ERR> From https://git.ld.plazi.org/plazi/treatments-xml
ERR>    d6dfe7cb1af..056eefba73c  main       -> origin/main
OUT> Updating d6dfe7cb1af..056eefba73c
OUT> Fast-forward
OUT>  ...9C.xml => 1C7B8784FF81B01B1369B21B7166F859.xml} | 104 ++++++--
OUT>  data/1C/7B/87/1C7B8784FF82B01D111EB68676E7F805.xml | 118 +++++++++
OUT>  data/1C/7B/87/1C7B8784FF83B01A11E9B1AA768EFA1D.xml | 114 --------
OUT>  ...A6.xml => 1C7B8784FF85B01F11E8B73577ABF9A6.xml} | 176 +++++-------
OUT>  ...D1.xml => 1C7B8784FFA1B03A1132B78C71B0FAF6.xml} | 143 +++++-----
OUT>  data/1C/7B/87/1C7B8784FFA2B03D110BB1B970F3FAD1.xml |  97 +++++++
OUT>  data/1C/7B/87/1C7B8784FFA6B02111D1B70077B5F854.xml | 100 +++++++
OUT>  data/1C/7B/87/1C7B8784FFA7B0211347B19477B5F854.xml | 143 ----------
OUT>  data/1C/7B/87/1C7B8784FFA7B03E1347B1947661F851.xml | 104 ++++++++
OUT>  data/1C/7B/87/1C7B8784FFA9B0331122B222760EFB67.xml |  73 +++--
OUT>  data/1C/7B/87/1C7B8784FFAAB03511C3B7F47146FB0E.xml |  66 +++--
OUT>  data/1C/7B/87/1C7B8784FFACB0341162B09D71B4FA6F.xml | 226 ++++++++++++++++
OUT>  data/1C/7B/87/1C7B8784FFACB0361162B09D76D3F856.xml | 283 --------------------
OUT>  data/1C/7B/87/1C7B8784FFAEB0391134B23A7112FCFB.xml |  72 -----
OUT>  data/1C/7B/87/1C7B8784FFAFB0361356B25777C4FA74.xml | 163 ++++++++++++
OUT>  data/1C/7B/87/1C7B8784FFB2B02D12E0B2E37520F850.xml | 125 +++++++++
OUT>  data/1C/7B/87/1C7B8784FFB2B02F12E0B2E3779EFE23.xml | 201 --------------
OUT>  data/1C/7B/87/1C7B8784FFB5B02F11C9B7D7779EFE23.xml | 165 ++++++++++++
OUT>  data/1C/7B/87/1C7B8784FFB8B023117AB6CA769DF85E.xml | 102 +++++++
OUT>  data/1C/7B/87/1C7B8784FFB8B024117AB6CA7114FE0E.xml | 294 ---------------------
OUT>  data/1C/7B/87/1C7B8784FFBAB02411CDB1FF7114FE0E.xml | 263 ++++++++++++++++++
OUT>  data/1C/7B/87/1C7B8784FFBBB02211EAB7A176D2F85B.xml |  95 +++++++
OUT>  22 files changed, 1861 insertions(+), 1366 deletions(-)
OUT>  rename data/1C/7B/87/{1C7B8784FF81B01B1369B21B7197FA9C.xml => 1C7B8784FF81B01B1369B21B7166F859.xml} (67%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FF82B01D111EB68676E7F805.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FF83B01A11E9B1AA768EFA1D.xml
OUT>  rename data/1C/7B/87/{1C7B8784FF82B01F111EB68677ABF9A6.xml => 1C7B8784FF85B01F11E8B73577ABF9A6.xml} (56%)
OUT>  rename data/1C/7B/87/{1C7B8784FFA1B03D1132B78C70F3FAD1.xml => 1C7B8784FFA1B03A1132B78C71B0FAF6.xml} (61%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFA2B03D110BB1B970F3FAD1.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFA6B02111D1B70077B5F854.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFA7B0211347B19477B5F854.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFA7B03E1347B1947661F851.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFACB0341162B09D71B4FA6F.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFACB0361162B09D76D3F856.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFAEB0391134B23A7112FCFB.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFAFB0361356B25777C4FA74.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFB2B02D12E0B2E37520F850.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFB2B02F12E0B2E3779EFE23.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFB5B02F11C9B7D7779EFE23.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFB8B023117AB6CA769DF85E.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFB8B024117AB6CA7114FE0E.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFBAB02411CDB1FF7114FE0E.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFBBB02211EAB7A176D2F85B.xml
== git pull successful ==
Starting transformation
{
  "id": "2025-05-05T18:56:48.030Z",
  "from": "d6dfe7cb1af6333dbb7ead95b29cab8a65f08775",
  "till": "056eefba73cc55b31d8fe6ccda261754c6d21bf7",
  "author": {
    "name": "treatmentbank",
    "email": "treatmentbank@noreply.git.ld.plazi.org"
  },
  "files": {
    "from": "d6dfe7cb1af6333dbb7ead95b29cab8a65f08775",
    "till": "056eefba73cc55b31d8fe6ccda261754c6d21bf7",
    "added": [
      "data/1C/7B/87/1C7B8784FF81B01B1369B21B7166F859.xml",
      "data/1C/7B/87/1C7B8784FF82B01D111EB68676E7F805.xml",
      "data/1C/7B/87/1C7B8784FF85B01F11E8B73577ABF9A6.xml",
      "data/1C/7B/87/1C7B8784FFA1B03A1132B78C71B0FAF6.xml",
      "data/1C/7B/87/1C7B8784FFA2B03D110BB1B970F3FAD1.xml",
      "data/1C/7B/87/1C7B8784FFA6B02111D1B70077B5F854.xml",
      "data/1C/7B/87/1C7B8784FFA7B03E1347B1947661F851.xml",
      "data/1C/7B/87/1C7B8784FFACB0341162B09D71B4FA6F.xml",
      "data/1C/7B/87/1C7B8784FFAFB0361356B25777C4FA74.xml",
      "data/1C/7B/87/1C7B8784FFB2B02D12E0B2E37520F850.xml",
      "data/1C/7B/87/1C7B8784FFB5B02F11C9B7D7779EFE23.xml",
      "data/1C/7B/87/1C7B8784FFB8B023117AB6CA769DF85E.xml",
      "data/1C/7B/87/1C7B8784FFBAB02411CDB1FF7114FE0E.xml",
      "data/1C/7B/87/1C7B8784FFBBB02211EAB7A176D2F85B.xml"
    ],
    "removed": [
      "data/1C/7B/87/1C7B8784FF81B01B1369B21B7197FA9C.xml",
      "data/1C/7B/87/1C7B8784FF82B01F111EB68677ABF9A6.xml",
      "data/1C/7B/87/1C7B8784FF83B01A11E9B1AA768EFA1D.xml",
      "data/1C/7B/87/1C7B8784FFA1B03D1132B78C70F3FAD1.xml",
      "data/1C/7B/87/1C7B8784FFA7B0211347B19477B5F854.xml",
      "data/1C/7B/87/1C7B8784FFACB0361162B09D76D3F856.xml",
      "data/1C/7B/87/1C7B8784FFAEB0391134B23A7112FCFB.xml",
      "data/1C/7B/87/1C7B8784FFB2B02F12E0B2E3779EFE23.xml",
      "data/1C/7B/87/1C7B8784FFB8B024117AB6CA7114FE0E.xml"
    ],
    "modified": [
      "data/1C/7B/87/1C7B8784FFA9B0331122B222760EFB67.xml",
      "data/1C/7B/87/1C7B8784FFAAB03511C3B7F47146FB0E.xml"
    ]
  }
}

Total files: 25

starting gg2rdf on document id: 1C7B8784FFA9B0331122B222760EFB67
gg2rdf successful
starting gg2rdf on document id: 1C7B8784FFAAB03511C3B7F47146FB0E
gg2rdf successful
starting gg2rdf on document id: 1C7B8784FF81B01B1369B21B7166F859
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FF82B01D111EB68676E7F805
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FF85B01F11E8B73577ABF9A6
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFA1B03A1132B78C71B0FAF6
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFA2B03D110BB1B970F3FAD1
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFA6B02111D1B70077B5F854
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFA7B03E1347B1947661F851
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFACB0341162B09D71B4FA6F
gg2rdf successful
starting gg2rdf on document id: 1C7B8784FFAFB0361356B25777C4FA74
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFB2B02D12E0B2E37520F850
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFB5B02F11C9B7D7779EFE23
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFB8B023117AB6CA769DF85E
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFBAB02411CDB1FF7114FE0E
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFBBB02211EAB7A176D2F85B
Error: the treatment is lacking the taxon
gg2rdf successful with errors
== starting git pull ==
ERR> From https://git.ld.plazi.org/plazi/treatments-rdf
ERR>    2bf128d01da8..de6931dc3a70  main       -> origin/main
ERR> Auto packing the repository in background for optimum performance.
ERR> See "git help gc" for manual housekeeping.
ERR> warning: The last gc run reported the following. Please correct the root cause
ERR> and remove .git/gc.log
ERR> Automatic cleanup will not be performed until the file is removed.
ERR> 
ERR> warning: There are too many unreachable loose objects; run 'git prune' to remove them.
ERR> 
OUT> Already up to date.
== git pull successful ==
== git commit ==
ERR> Auto packing the repository in background for optimum performance.
ERR> See "git help gc" for manual housekeeping.
ERR> warning: The last gc run reported the following. Please correct the root cause
ERR> and remove .git/gc.log
ERR> Automatic cleanup will not be performed until the file is removed.
ERR> 
ERR> warning: There are too many unreachable loose objects; run 'git prune' to remove them.
ERR> 
OUT> [main f17a92e65616] GG2RDF plazi/treatments-xml@056eefba73cc55b31d8fe6ccda261754c6d21bf7
OUT>  18 files changed, 411 insertions(+), 65 deletions(-)
OUT>  rename data/1C/7B/87/{1C7B8784FF81B01B1369B21B7197FA9C.ttl => 1C7B8784FF81B01B1369B21B7166F859.ttl} (94%)
OUT>  rename data/1C/7B/87/{1C7B8784FF82B01F111EB68677ABF9A6.ttl => 1C7B8784FF82B01D111EB68676E7F805.ttl} (94%)
OUT>  rename data/1C/7B/87/{1C7B8784FF83B01A11E9B1AA768EFA1D.ttl => 1C7B8784FF85B01F11E8B73577ABF9A6.ttl} (90%)
OUT>  rename data/1C/7B/87/{1C7B8784FFA1B03D1132B78C70F3FAD1.ttl => 1C7B8784FFA1B03A1132B78C71B0FAF6.ttl} (94%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFA2B03D110BB1B970F3FAD1.ttl
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFA6B02111D1B70077B5F854.ttl
OUT>  rename data/1C/7B/87/{1C7B8784FFA7B0211347B19477B5F854.ttl => 1C7B8784FFA7B03E1347B1947661F851.ttl} (94%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFACB0341162B09D71B4FA6F.ttl
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFAEB0391134B23A7112FCFB.ttl
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFAFB0361356B25777C4FA74.ttl
OUT>  rename data/1C/7B/87/{1C7B8784FFB2B02F12E0B2E3779EFE23.ttl => 1C7B8784FFB2B02D12E0B2E37520F850.ttl} (94%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFB5B02F11C9B7D7779EFE23.ttl
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFB8B023117AB6CA769DF85E.ttl
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFB8B024117AB6CA7114FE0E.ttl
OUT>  rename data/1C/7B/87/{1C7B8784FFACB0361162B09D76D3F856.ttl => 1C7B8784FFBAB02411CDB1FF7114FE0E.ttl} (89%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFBBB02211EAB7A176D2F85B.ttl
== git push ==
git push successful
Completed transformation successfully
=== Sucessfully completed job 2025-05-05T18:56:48.030Z ===