=== Starting job 2025-05-05T14:47:30.347Z ===
== starting git pull ==
ERR> From https://git.ld.plazi.org/plazi/treatments-xml
ERR>    d46baef4100..e5319972bb0  main       -> origin/main
OUT> Updating d46baef4100..e5319972bb0
OUT> Fast-forward
OUT>  data/03/CA/CF/03CACF3D1844020DF572FC54B56D7FD3.xml | 120 ++++----
OUT>  data/03/CA/CF/03CACF3D18460213F55CFED0B5E87E11.xml |  95 ++++---
OUT>  data/03/CA/CF/03CACF3D18480215F54EF9C2B5047FF0.xml | 315 ++++++++++-----------
OUT>  data/03/CA/CF/03CACF3D1859020AF56BFED0B5697977.xml |  97 ++++---
OUT>  ...40.xml => 1C7B8784FFC6B0411126B4827166FC12.xml} | 119 ++------
OUT>  data/1C/7B/87/1C7B8784FFC9B0501192B04E7483F869.xml | 139 +++++++++
OUT>  data/1C/7B/87/1C7B8784FFC9B0501374B0E47483F869.xml | 123 --------
OUT>  data/1C/7B/87/1C7B8784FFC9B0511374B0E470A7FBB8.xml |  72 +++++
OUT>  data/1C/7B/87/1C7B8784FFCFB056113BB6117062FE92.xml |  89 ------
OUT>  data/1C/7B/87/1C7B8784FFCFB056130AB63C7062FE92.xml | 162 +++++++++++
OUT>  data/1C/7B/87/1C7B8784FFCFB057130AB63C700FFE6E.xml |  92 ------
OUT>  data/1C/7B/87/1C7B8784FFD3B04E11EDB29371B0FDEA.xml | 225 ---------------
OUT>  data/1C/7B/87/1C7B8784FFD8B040135AB4827561F840.xml | 109 +++++++
OUT>  data/1C/7B/87/1C7B8784FFF4B06F1342B7A37799FC28.xml | 131 +++++++++
OUT>  data/1C/7B/87/1C7B8784FFF5B06C1191B06575BCFC1B.xml | 106 +++++++
OUT>  15 files changed, 1047 insertions(+), 947 deletions(-)
OUT>  rename data/1C/7B/87/{1C7B8784FFC6B0401126B4827561F840.xml => 1C7B8784FFC6B0411126B4827166FC12.xml} (66%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFC9B0501192B04E7483F869.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFC9B0501374B0E47483F869.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFC9B0511374B0E470A7FBB8.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFCFB056113BB6117062FE92.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFCFB056130AB63C7062FE92.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFCFB057130AB63C700FFE6E.xml
OUT>  delete mode 100644 data/1C/7B/87/1C7B8784FFD3B04E11EDB29371B0FDEA.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFD8B040135AB4827561F840.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFF4B06F1342B7A37799FC28.xml
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFF5B06C1191B06575BCFC1B.xml
== git pull successful ==
Starting transformation
{
  "id": "2025-05-05T14:47:30.347Z",
  "from": "d46baef4100f9c1974dab6987289593968bc1011",
  "till": "e5319972bb0070fc9597242c88f7e7db7a701aec",
  "author": {
    "name": "treatmentbank",
    "email": "treatmentbank@noreply.git.ld.plazi.org"
  },
  "files": {
    "from": "d46baef4100f9c1974dab6987289593968bc1011",
    "till": "e5319972bb0070fc9597242c88f7e7db7a701aec",
    "added": [
      "data/1C/7B/87/1C7B8784FFC6B0411126B4827166FC12.xml",
      "data/1C/7B/87/1C7B8784FFC9B0501192B04E7483F869.xml",
      "data/1C/7B/87/1C7B8784FFC9B0511374B0E470A7FBB8.xml",
      "data/1C/7B/87/1C7B8784FFCFB056130AB63C7062FE92.xml",
      "data/1C/7B/87/1C7B8784FFD8B040135AB4827561F840.xml",
      "data/1C/7B/87/1C7B8784FFF4B06F1342B7A37799FC28.xml",
      "data/1C/7B/87/1C7B8784FFF5B06C1191B06575BCFC1B.xml"
    ],
    "removed": [
      "data/1C/7B/87/1C7B8784FFC6B0401126B4827561F840.xml",
      "data/1C/7B/87/1C7B8784FFC9B0501374B0E47483F869.xml",
      "data/1C/7B/87/1C7B8784FFCFB056113BB6117062FE92.xml",
      "data/1C/7B/87/1C7B8784FFCFB057130AB63C700FFE6E.xml",
      "data/1C/7B/87/1C7B8784FFD3B04E11EDB29371B0FDEA.xml"
    ],
    "modified": [
      "data/03/CA/CF/03CACF3D1844020DF572FC54B56D7FD3.xml",
      "data/03/CA/CF/03CACF3D18460213F55CFED0B5E87E11.xml",
      "data/03/CA/CF/03CACF3D18480215F54EF9C2B5047FF0.xml",
      "data/03/CA/CF/03CACF3D1859020AF56BFED0B5697977.xml"
    ]
  }
}

Total files: 16

starting gg2rdf on document id: 03CACF3D1844020DF572FC54B56D7FD3
gg2rdf successful
starting gg2rdf on document id: 03CACF3D18460213F55CFED0B5E87E11
gg2rdf successful
starting gg2rdf on document id: 03CACF3D18480215F54EF9C2B5047FF0
gg2rdf successful
starting gg2rdf on document id: 03CACF3D1859020AF56BFED0B5697977
gg2rdf successful
starting gg2rdf on document id: 1C7B8784FFC6B0411126B4827166FC12
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFC9B0501192B04E7483F869
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFC9B0511374B0E470A7FBB8
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFCFB056130AB63C7062FE92
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFD8B040135AB4827561F840
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFF4B06F1342B7A37799FC28
Error: the treatment is lacking the taxon
gg2rdf successful with errors
starting gg2rdf on document id: 1C7B8784FFF5B06C1191B06575BCFC1B
Error: the treatment is lacking the taxon
gg2rdf successful with errors
== starting git pull ==
ERR> From https://git.ld.plazi.org/plazi/treatments-rdf
ERR>    ce49c50d1006..a1fbee6f3cb4  main       -> origin/main
ERR> Auto packing the repository in background for optimum performance.
ERR> See "git help gc" for manual housekeeping.
ERR> warning: The last gc run reported the following. Please correct the root cause
ERR> and remove .git/gc.log
ERR> Automatic cleanup will not be performed until the file is removed.
ERR> 
ERR> warning: There are too many unreachable loose objects; run 'git prune' to remove them.
ERR> 
OUT> Already up to date.
== git pull successful ==
== git commit ==
ERR> Auto packing the repository in background for optimum performance.
ERR> See "git help gc" for manual housekeeping.
ERR> warning: The last gc run reported the following. Please correct the root cause
ERR> and remove .git/gc.log
ERR> Automatic cleanup will not be performed until the file is removed.
ERR> 
ERR> warning: There are too many unreachable loose objects; run 'git prune' to remove them.
ERR> 
OUT> [main 71b6f70888db] GG2RDF plazi/treatments-xml@e5319972bb0070fc9597242c88f7e7db7a701aec
OUT>  11 files changed, 111 insertions(+), 49 deletions(-)
OUT>  rename data/1C/7B/87/{1C7B8784FFC6B0401126B4827561F840.ttl => 1C7B8784FFC6B0411126B4827166FC12.ttl} (94%)
OUT>  rename data/1C/7B/87/{1C7B8784FFCFB056113BB6117062FE92.ttl => 1C7B8784FFC9B0501192B04E7483F869.ttl} (88%)
OUT>  rename data/1C/7B/87/{1C7B8784FFC9B0501374B0E47483F869.ttl => 1C7B8784FFC9B0511374B0E470A7FBB8.ttl} (94%)
OUT>  rename data/1C/7B/87/{1C7B8784FFCFB057130AB63C700FFE6E.ttl => 1C7B8784FFCFB056130AB63C7062FE92.ttl} (94%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFD8B040135AB4827561F840.ttl
OUT>  rename data/1C/7B/87/{1C7B8784FFD3B04E11EDB29371B0FDEA.ttl => 1C7B8784FFF4B06F1342B7A37799FC28.ttl} (89%)
OUT>  create mode 100644 data/1C/7B/87/1C7B8784FFF5B06C1191B06575BCFC1B.ttl
== git push ==
git push successful
Completed transformation successfully
=== Sucessfully completed job 2025-05-05T14:47:30.347Z ===