=== Starting job 2025-03-18T15:25:46.343Z ===
== starting git pull ==
ERR> From https://git.ld.plazi.org/plazi/treatments-xml
ERR>    8a9e72d23da..c4006774e3f  main       -> origin/main
OUT> Updating 8a9e72d23da..c4006774e3f
OUT> Fast-forward
OUT>  data/03/8F/87/038F87F9FFE1FF87FEE47F541D2BFE96.xml | 1464 --------------------
OUT>  data/03/8F/87/038F87F9FFF5FF99FEC5788B1D3FF817.xml |  455 ------
OUT>  data/03/8F/87/038F87F9FFFBFF92FEDB7E7E1D42FF15.xml |  399 ------
OUT>  data/03/8F/87/038F87F9FFFCFF8CFC687B8C1AAEFAF5.xml |  545 --------
OUT>  data/03/8F/87/038F87F9FFFFFF91FC38781618B8F86B.xml |  941 -------------
OUT>  data/2C/05/9D/2C059DA2F1905A578FFB1AF3155A9A2A.xml |  122 ++
OUT>  data/5B/49/87/5B4987F6F42BEE21FF39FB4F11DFFAF0.xml |  672 +++++++++
OUT>  data/5B/49/87/5B4987F6F42BEE22FF39FCC41089FED4.xml |  950 +++++++++++++
OUT>  data/5B/49/87/5B4987F6F42BEE2BFF39FB4F1127FA56.xml |  120 --
OUT>  data/5B/49/87/5B4987F6F42BEE2BFF39FCC411F7FBFE.xml |   96 --
OUT>  data/EF/8D/E2/EF8DE233CC835E759FD2CDDEEF0AE8AE.xml |  428 ++++++
OUT>  data/EF/C5/8A/EFC58AC6829A5A239958439EEDA6E188.xml |  442 ++++++
OUT>  12 files changed, 2614 insertions(+), 4020 deletions(-)
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFE1FF87FEE47F541D2BFE96.xml
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFF5FF99FEC5788B1D3FF817.xml
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFFBFF92FEDB7E7E1D42FF15.xml
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFFCFF8CFC687B8C1AAEFAF5.xml
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFFFFF91FC38781618B8F86B.xml
OUT>  create mode 100644 data/2C/05/9D/2C059DA2F1905A578FFB1AF3155A9A2A.xml
OUT>  create mode 100644 data/5B/49/87/5B4987F6F42BEE21FF39FB4F11DFFAF0.xml
OUT>  create mode 100644 data/5B/49/87/5B4987F6F42BEE22FF39FCC41089FED4.xml
OUT>  delete mode 100644 data/5B/49/87/5B4987F6F42BEE2BFF39FB4F1127FA56.xml
OUT>  delete mode 100644 data/5B/49/87/5B4987F6F42BEE2BFF39FCC411F7FBFE.xml
OUT>  create mode 100644 data/EF/8D/E2/EF8DE233CC835E759FD2CDDEEF0AE8AE.xml
OUT>  create mode 100644 data/EF/C5/8A/EFC58AC6829A5A239958439EEDA6E188.xml
== git pull successful ==
Starting transformation
{
  "id": "2025-03-18T15:25:46.343Z",
  "from": "8a9e72d23da20cf45e06e84b09cd82c037cd037c",
  "till": "c4006774e3f88d05b06004485aff45840c457e97",
  "author": {
    "name": "treatmentbank",
    "email": "treatmentbank@noreply.git.ld.plazi.org"
  },
  "files": {
    "from": "8a9e72d23da20cf45e06e84b09cd82c037cd037c",
    "till": "c4006774e3f88d05b06004485aff45840c457e97",
    "added": [
      "data/2C/05/9D/2C059DA2F1905A578FFB1AF3155A9A2A.xml",
      "data/5B/49/87/5B4987F6F42BEE21FF39FB4F11DFFAF0.xml",
      "data/5B/49/87/5B4987F6F42BEE22FF39FCC41089FED4.xml",
      "data/EF/8D/E2/EF8DE233CC835E759FD2CDDEEF0AE8AE.xml",
      "data/EF/C5/8A/EFC58AC6829A5A239958439EEDA6E188.xml"
    ],
    "removed": [
      "data/03/8F/87/038F87F9FFE1FF87FEE47F541D2BFE96.xml",
      "data/03/8F/87/038F87F9FFF5FF99FEC5788B1D3FF817.xml",
      "data/03/8F/87/038F87F9FFFBFF92FEDB7E7E1D42FF15.xml",
      "data/03/8F/87/038F87F9FFFCFF8CFC687B8C1AAEFAF5.xml",
      "data/03/8F/87/038F87F9FFFFFF91FC38781618B8F86B.xml",
      "data/5B/49/87/5B4987F6F42BEE2BFF39FB4F1127FA56.xml",
      "data/5B/49/87/5B4987F6F42BEE2BFF39FCC411F7FBFE.xml"
    ],
    "modified": []
  }
}

Total files: 12

starting gg2rdf on document id: 2C059DA2F1905A578FFB1AF3155A9A2A
gg2rdf successful
starting gg2rdf on document id: 5B4987F6F42BEE21FF39FB4F11DFFAF0
gg2rdf successful
starting gg2rdf on document id: 5B4987F6F42BEE22FF39FCC41089FED4
gg2rdf successful
starting gg2rdf on document id: EF8DE233CC835E759FD2CDDEEF0AE8AE
gg2rdf successful
starting gg2rdf on document id: EFC58AC6829A5A239958439EEDA6E188
gg2rdf successful
== starting git pull ==
ERR> From https://git.ld.plazi.org/plazi/treatments-rdf
ERR>    37b99cef6b9..2ea82511490  main       -> origin/main
OUT> Already up to date.
== git pull successful ==
Failed to remove file /workdir/target-repo/data/5B/49/87/5B4987F6F42BEE2BFF39FB4F1127FA56.ttl. Possbly the xml file was removed before it was transformed. 
NotFound: No such file or directory (os error 2): remove '/workdir/target-repo/data/5B/49/87/5B4987F6F42BEE2BFF39FB4F1127FA56.ttl'
Failed to remove file /workdir/target-repo/data/5B/49/87/5B4987F6F42BEE2BFF39FCC411F7FBFE.ttl. Possbly the xml file was removed before it was transformed. 
NotFound: No such file or directory (os error 2): remove '/workdir/target-repo/data/5B/49/87/5B4987F6F42BEE2BFF39FCC411F7FBFE.ttl'
== git commit ==
OUT> [main fc89db3253d] GG2RDF plazi/treatments-xml@c4006774e3f88d05b06004485aff45840c457e97
OUT>  10 files changed, 704 insertions(+), 771 deletions(-)
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFE1FF87FEE47F541D2BFE96.ttl
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFF5FF99FEC5788B1D3FF817.ttl
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFFBFF92FEDB7E7E1D42FF15.ttl
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFFCFF8CFC687B8C1AAEFAF5.ttl
OUT>  delete mode 100644 data/03/8F/87/038F87F9FFFFFF91FC38781618B8F86B.ttl
OUT>  create mode 100644 data/2C/05/9D/2C059DA2F1905A578FFB1AF3155A9A2A.ttl
OUT>  create mode 100644 data/5B/49/87/5B4987F6F42BEE21FF39FB4F11DFFAF0.ttl
OUT>  create mode 100644 data/5B/49/87/5B4987F6F42BEE22FF39FCC41089FED4.ttl
OUT>  create mode 100644 data/EF/8D/E2/EF8DE233CC835E759FD2CDDEEF0AE8AE.ttl
OUT>  create mode 100644 data/EF/C5/8A/EFC58AC6829A5A239958439EEDA6E188.ttl
== git push ==
git push successful
Completed transformation successfully
=== Sucessfully completed job 2025-03-18T15:25:46.343Z ===